Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0065Probable transport protein. (444 aa)    
Predicted Functional Partners:
cce_0066
Putative sodium/sulfate transporter, DASS family.
     
0.739
cce_0067
Cation-transporting ATPase, E1-E2 type.
   
   0.658
exoD2
Exopolysaccharide synthesis protein.
       0.606
cce_0906
Hypothetical protein.
  
     0.491
cce_1180
Unknown; Contains a cupredoxin domain.
  
   
 0.465
cce_3078
Polyketide synthase.
  
  
 0.441
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
       0.438
cce_5196
Hypothetical protein; Contains a TrkA-N domain.
 
     0.422
cce_0907
Unknown.
  
     0.421
cce_3831
Hypothetical protein; Contains DUF202.
  
     0.420
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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