STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0109Hypothetical protein; Contains a polysaccharide deacetylase domain. (619 aa)    
Predicted Functional Partners:
cce_3678
Unknown.
  
     0.713
cce_0382
Hypothetical protein; Contains a thymidylate synthase domain.
  
     0.648
cce_1080
Unknown; Contains a metallophosphoesterase domain.
  
     0.564
cce_4383
Unknown.
  
     0.525
cce_4611
Unknown.
  
     0.515
cce_1546
Hypothetical protein; Contains DUF6, transmembrane.
 
    0.514
cce_2622
Hypothetical protein; Contains TPR_1 tetratricopeptide repeat domains.
  
     0.500
cce_0116
Unknown.
  
     0.484
cce_4071
Probable cobalt ABC transporter ATP binding protein.
  
     0.460
cce_4476
Unknown.
  
     0.449
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.