Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
cce_0124Putative ABC transporter, oligopeptides. (290 aa)    
Predicted Functional Partners:
cce_2386
ATP-binding protein of ABC transporter; Belongs to the ABC transporter superfamily.
 
 0.991
cce_3634
ATP-binding protein of ABC transporter; Belongs to the ABC transporter superfamily.
 
 0.991
cce_0991
Permease protein of ABC transporter.
 
 0.963
cce_0780
Permease protein of oligopeptide ABC transporter.
 
 0.962
cce_2297
Binding protein dependent transport systems inner membrane component.
 
 0.960
cce_2619
ABC transporter, substrate binding protein, possibly oligopeptides.
 
 
 0.925
cce_0779
Extracellular solute-binding protein, family 5.
 
 
 0.919
cce_0948
ATP-binding protein of amino acid ABC transporter.
 
    
 0.848
cce_3801
Putative iron(III)-transport ATP-binding protein; Belongs to the ABC transporter superfamily.
      0.841
cce_1530
ATP-binding protein of ABC transporter.
 
 0.814
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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