Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0130Contains an abortive infection protein domain. (211 aa)    
Predicted Functional Partners:
cce_0129
Unknown.
     
 0.885
cce_0131
Unknown.
 
     0.854
cce_0128
Unknown.
       0.809
cce_1173
Unknown.
 
    0.747
cce_1922
Unknown.
  
     0.743
cce_0291
Unknown; Contains a heat shock protein DnaJ, N-terminal domain.
  
     0.739
cce_4197
Hypothetical protein.
  
     0.725
cce_0318
Unknown.
  
     0.722
cce_2206
CHP02450-containing protein.
  
     0.719
cce_3998
Unknown.
  
     0.708
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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