STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0141Unknown; Contains a methyltransferase type 11 domain. (225 aa)    
Predicted Functional Partners:
cce_0815
Unknown.
    
 0.703
cce_0881
Unknown; Contains DUF29.
   
   0.620
cce_0140
Hypothetical protein; Contains DUF820.
       0.559
cce_0142
Unknown.
       0.526
cce_3078
Polyketide synthase.
  
 
 0.523
chlD
Magnesium chelatase, ATPase subunit D; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
 
 0.522
cce_0143
Hypothetical protein.
       0.489
cce_0772
Unknown; Contains a FAD dependent oxidoreductase domain.
   
 0.464
cce_2733
Putative Monooxygenase, FAD-binding.
   
 0.464
cce_3426
Unknown.
   
 0.464
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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