STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_0171Unknown. (509 aa)    
Predicted Functional Partners:
cce_3315
Conserved hypothetical protein.
   
    0.851
cce_0853
Unknown; Contains a phosphoribosyltransferase domain.
  
  
 0.797
cce_0170
Hypothetical protein.
       0.762
nrdA
Ribonucleoside-diphosphate reductase alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
    0.745
cce_0169
Hypothetical protein; Contains DUF540.
       0.680
gph
Putative HAD-superfamily hydrolase, subfamily IA, variant 3.
  
    0.657
cce_1761
HAD-superfamily hydrolase, subfamily IA, variant 3.
  
    0.657
cce_5031
Putative HAD-superfamily hydrolase, subfamily IA, variant 3.
  
    0.657
cce_1445
Putative dienelactone hydrolase.
  
  
 0.596
clcD
Dienelactone hydrolase.
  
  
 0.596
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.