STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_0234Unknown; Contains a stage II sporulation E domain. (478 aa)    
Predicted Functional Partners:
cce_3321
Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.921
cce_0470
Hypothetical protein; Contains an Anti-sigma factor antagonist domain; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.864
pmgA
Photomixotrophic growth related protein.
 
 
 0.831
cce_0656
Two-component hybrid sensor and regulator.
  
 0.816
cce_1801
Unknown; Contains an Anti-sigma factor antagonist domain; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.804
cce_4177
Hypothetical protein; Contains a GGDEF domain, Forkhead-associated domain, EAL domain, SMAD/FHA domain, and a PAS fold domain.
  
  
 0.778
cce_4651
Hypothetical protein; Contains an EAL signaling domain.
  
  
 0.778
cce_4317
CheA signal transduction histidine kinase.
  
  
 0.774
cce_1521
Unknown; Contains PAS, GGDEF, EAL, Response regulator receiver, CheY-like, and PAS fold-3 domains.
  
  
 0.770
cce_3429
Hypothetical protein; Contains Anti-Sigma-factor antagonist (STAS) and glycosyl transferase domains.
  
 
 0.756
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.