STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_0239Hypothetical protein; Contains a Na-Ca exchanger/integrin-beta4 domain. (1322 aa)    
Predicted Functional Partners:
aspA
Aspartoacylase; Belongs to the AspA/AstE family. Aspartoacylase subfamily.
  
     0.634
cce_1288
Putative lipoxygenase.
  
     0.589
cce_3498
Protein-arginine deiminase.
  
     0.568
cce_1172
Unknown; Contains a winged helix repressor DNA-binding and a Pleckstrin/ G-protein domain, interacting region domains.
  
     0.547
cce_5143
Contains low-density lipoprotein receptor YWTD repeat domains.
  
   0.540
cce_2089
Hypothetical protein; Contains a serralysin-like metalloprotease, C-terminal and PKD domains.
  
     0.532
cce_4269
Probable sulfotransferase.
  
     0.459
cce_2648
Probable lipoxygenase.
  
     0.449
cce_5144
Putative AAA ATPase.
  
    0.447
cce_4759
Putative haem peroxidase.
  
     0.446
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.