Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0291Unknown; Contains a heat shock protein DnaJ, N-terminal domain. (720 aa)    
Predicted Functional Partners:
hoxF
NADH dehydrogenase I chain F.
    
  0.861
cce_0149
Probable protein phosphatase.
   
 
 0.833
cce_2464
Hsp70-like protein; Belongs to the heat shock protein 70 family.
  
  0.816
cce_0456
Thioredoxin-like protein.
  
 
 0.815
cce_3078
Polyketide synthase.
  
 
 0.797
cce_0862
Unknown.
  
 
 
 0.793
cce_3079
Probable polyketide synthase.
   
 
 0.783
cce_4197
Hypothetical protein.
  
 
 0.778
atp1
ATP synthase subunit 1.
  
     0.772
cce_3998
Unknown.
  
   0.770
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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