STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_0340Unknown; Contains DUF187. (441 aa)    
Predicted Functional Partners:
cce_3573
Unknown.
  
     0.703
cce_3393
Unknown.
  
     0.638
cce_1991
Hypothetical protein; Belongs to the orange carotenoid-binding protein family.
  
     0.625
cce_0742
Unknown.
  
     0.612
cce_1537
Unknown; Belongs to the orange carotenoid-binding protein family.
  
     0.612
cce_0456
Thioredoxin-like protein.
  
     0.582
cce_4169
Unknown.
  
     0.581
cce_4656
Unknown.
  
     0.558
cce_0339
UPF0047-containing protein.
       0.553
cce_4355
Unknown.
  
     0.546
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.