STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
natBProbable ABC transporter periplasmic branched chain amino acid binding protein. (446 aa)    
Predicted Functional Partners:
cce_3156
Putative branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.988
cce_2946
Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.986
natA
ATP-binding protein of ABC transporter.
 
 
 0.985
cce_4521
ATP-binding protein of branched-chain amino acid ABC transporter.
 
 
 0.975
cce_4628
Unknown; Contains an extracellular ligand-binding receptor domain.
  
     0.586
cce_0714
Hypothetical protein; Contains a CheW-like domain.
  
 
   0.520
glsF
Ferredoxin-dependent glutamate synthase.
     
 0.448
psaK1
Photosystem I reaction center subunit X.
 
     0.416
cce_0397
Hypothetical protein; Contains a HTTM domain.
       0.406
cce_0398
Hypothetical protein.
       0.406
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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