STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_0411Putative acetyl transferase. (200 aa)    
Predicted Functional Partners:
cce_0412
Glycosyl transferase, family 2.
 
    0.836
cce_0698
Acetyltransferase, trimeric LpxA-like protein.
  
     0.661
cce_1994
Unknown.
 
  
 0.629
cce_0413
Unknown; Contains a secretion protein HlyD domain; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.520
cce_1468
Putative lipopolysaccharide biosynthesis.
  
  
 0.513
cce_0414
RND multidrug efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
    0.462
cce_3078
Polyketide synthase.
  
  
 0.416
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.