Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gspEGeneral secretion pathway protein E. (677 aa)    
Predicted Functional Partners:
pilC
Pilin biogenesis protein.
 
 0.995
pilM
Type IV pilus assembly protein.
 
 
 
 0.938
cce_2840
Putative HofG-like general secretion pathway protein.
 
 
 0.903
hofD
Type 4 prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.885
cce_1615
Putative HofG-like general secretion pathway protein.
 
 
 0.863
pilT1
Twitching motility protein.
 
  
0.831
hofG
Probable general secretion pathway protein G.
 
 
 0.826
comE
Competence protein.
  
  
 0.756
gspD
General secretion pathway protein D.
 
 
 
 0.752
cce_3381
Putative HofG-like general secretion pathway protein.
 
 
 0.748
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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