STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilT2Twitching motility protein. (447 aa)    
Predicted Functional Partners:
pilC
Pilin biogenesis protein.
  
 0.945
pilM
Type IV pilus assembly protein.
 
   
 0.834
hofD
Type 4 prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.831
cce_2912
Hypothetical protein.
 
  
 0.818
cce_2840
Putative HofG-like general secretion pathway protein.
 
   
 0.774
cce_1615
Putative HofG-like general secretion pathway protein.
 
   
 0.690
hofG
Probable general secretion pathway protein G.
 
   
 0.644
kaiB3
Circadian clock protein.
       0.578
gspD
General secretion pathway protein D.
 
   
 0.578
gspE
General secretion pathway protein E.
 
  
0.461
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.