Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0446Two-component response regulator. (121 aa)    
Predicted Functional Partners:
cce_0444
Methyl accepting chemotaxis protein.
 
  0.963
cce_0164
Two-component sensor histidine kinase.
 
 0.929
cce_2508
Two-component hybrid sensor and regulator.
 
 
 0.911
cce_2546
Probable two-component sensor histidine kinase.
 
   0.908
cce_1777
Probable two-component hybrid sensor and regulator.
 
 
 0.906
cce_0289
Two-component response regulator.
  
  
 
0.902
cce_3512
Putative diguanylate cyclase (GGDEF domain).
 
 
    0.900
cce_4405
Two-component hybrid sensor and regulator.
 
 
 0.887
cheW
Probable chemotaxis protein.
  
  
 0.840
cce_4426
Two-component sensor histidine kinase.
 
   0.839
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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