STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_0452Hypothetical protein; Contains a transcriptional regulator, Rrf2 domain. (153 aa)    
Predicted Functional Partners:
nifU
Iron-sulfur cluster assembly protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.878
cce_0451
Hypothetical protein; Contains a glutathione-dependent formaldehyde-activating, GFA domain.
       0.793
cce_0202
NifS-like class-V aminotransferase, probable cysteine desulfurase.
  
  
 0.765
cce_0279
NifS-like class-V aminotransferase, probable cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.765
nifS
Nitrogenase cofactor synthesis protein; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
  
 0.765
cbiB
Cobalamin biosynthetic protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
       0.664
cce_0541
Unknown.
  
  
 0.586
cce_1857
NifU-like protein.
 
  
 0.547
cce_3078
Polyketide synthase.
   
 
 0.482
cce_0453
Putative transcriptional regulator AbrB.
       0.469
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.