Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0467Conserved hypothetical protein. (459 aa)    
Predicted Functional Partners:
cce_0149
Probable protein phosphatase.
    
 0.863
cce_3657
Unknown.
  
     0.717
cce_0820
Unknown.
  
     0.709
cce_5005
Hypothetical protein; Contains Helicase, C-terminal, Type III restriction enzyme, res subunit and DEAD/DEAH box helicase, N-terminal domains.
    
 0.708
cce_4094
Unknown.
  
     0.700
cce_3430
Unknown.
  
     0.699
cce_3526
Conserved hypothetical protein.
  
     0.686
cce_1172
Unknown; Contains a winged helix repressor DNA-binding and a Pleckstrin/ G-protein domain, interacting region domains.
    
 0.684
cce_0703
Unknown.
  
     0.682
cce_1609
Unknown; Contains DUF608.
    
 0.680
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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