STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_0477Hypothetical protein; Contains a Thioredoxin fold domain. (185 aa)    
Predicted Functional Partners:
hoxF
NADH dehydrogenase I chain F.
 
 
 0.925
hoxE
Probable NADH dehydrogenase I chain E.
 
 
 0.851
hoxU
Hydrogenase chain U.
 
 
 
 0.765
cce_0478
Conserved hypothetical protein.
 
     0.721
nifJ
Pyruvate oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
  
  
 0.665
cce_0546
Hypothetical protein; Contains a thioredoxin fold domain.
 
 
0.623
ndhD3
NADH dehydrogenase subunit 4.
  
    0.458
ndhD5
NADH dehydrogenase subunit 4.
  
    0.458
ndhD4
NADH dehydrogenase subunit 4.
  
    0.458
cce_2339
Oxidoreductase, aldo/keto reductase family.
  
     0.458
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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