STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_0478Conserved hypothetical protein. (87 aa)    
Predicted Functional Partners:
cce_0479
Probable nutrient-stress induced DNA binding protein; Belongs to the Dps family.
 
     0.794
cce_0477
Hypothetical protein; Contains a Thioredoxin fold domain.
 
     0.719
cce_0819
Conserved hypothetical protein.
  
     0.708
cce_2458
Conserved hypothetical protein.
  
     0.703
cce_0465
Conserved hypothetical protein.
  
     0.696
cce_1795
Conserved hypothetical protein.
  
     0.655
cce_4418
Unknown.
  
     0.643
cce_4648
Hypothetical protein; Contains photosynthetic reaction center H-chain cytoplasmic and CHP2271 C-terminal domains.
  
     0.611
cce_3734
Unknown.
  
     0.599
cce_2502
Putative CsbD-like protein; Belongs to the UPF0337 (CsbD) family.
  
     0.596
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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