Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cce_0516Glycosyl transferase, group 1. (1028 aa)    
Predicted Functional Partners:
cce_2852
Unknown; Contains a TPR-like helical domain.
   
 0.760
cce_0517
Unknown; Contains a glycosyl transferase, family 2 domain.
  
    0.662
cce_2241
Hypothetical protein; Contains a Filamentous haemagglutinin, N-terminal domain.
  
     0.649
cce_3332
Unknown; Contains a metallophosphoesterase domain.
  
     0.540
cce_5094
Hypothetical protein.
  
     0.540
cce_2247
Hypothetical protein; Contains a beta-lactamase-like domain.
  
     0.528
cce_4099
Hypothetical protein; Contains a YcaO_like domain.
  
     0.510
cce_4589
Glycosyl transferase, group 1.
  
     0.496
cce_4796
Putative peptidase; Belongs to the peptidase S8 family.
  
     0.475
cce_1925
Contains a GTP-binding protein, HSR1-related domain.
  
     0.453
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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