STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_0519Hypothetical protein; Contains glycosyl transferase, family 2 and Methyltransferase type 12 domains. (479 aa)    
Predicted Functional Partners:
cce_0520
Putative methyltransferase.
 
    0.766
cce_0521
Hypothetical protein; Contains a methyltransferase FkbM domain.
     
 0.582
cce_3078
Polyketide synthase.
  
 
 0.569
cce_0518
Unknown.
       0.566
cce_0522
Hypothetical protein; Contains a methyltransferase FkbM domain.
     
 0.566
cce_3079
Probable polyketide synthase.
  
 
 0.523
cce_0523
Hypothetical protein.
       0.520
cce_0524
Unknown; Contains a glycosyl transferase, group 1 domain.
  
  
 0.512
nifJ
Pyruvate oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
   
 
 0.459
cce_3761
Polyketide synthase.
  
 
 0.436
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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