Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0536Unknown. (80 aa)    
Predicted Functional Partners:
cce_4656
Unknown.
  
     0.771
cce_1589
Unknown; Contains a transglutaminase-like domain.
  
     0.768
cce_1238
Conserved hypothetical protein.
  
     0.764
cce_4389
Unknown.
  
     0.746
cce_3436
Unknown.
  
     0.736
cce_2552
Unknown; Contains amidinotransferase and CHP300 domains.
 
     0.735
cce_2239
Contains an abortive infection protein domain.
  
     0.732
cce_4143
Unknown.
  
     0.727
rpl25
50S ribosomal protein L25; Belongs to the bacterial ribosomal protein bL25 family.
  
     0.720
cce_3240
Contains an abortive infection protein domain.
  
     0.706
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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