STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdxN4Fe-4S ferredoxin. (120 aa)    
Predicted Functional Partners:
nifB
Nitrogenase cofactor biosynthesis protein.
 
  
 0.945
nifU
Iron-sulfur cluster assembly protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
   
 0.873
hoxF
NADH dehydrogenase I chain F.
   
 
 0.750
cce_0546
Hypothetical protein; Contains a thioredoxin fold domain.
   
 
 0.739
hoxE
Probable NADH dehydrogenase I chain E.
   
 
 0.739
cce_0555
Hypothetical protein.
       0.718
cyl0016
Hypothetical protein.
     
 0.704
cyl0017
Contains a PilT protein, N-terminal domain.
     
 0.704
hoxH
Hydrogenase large subunit.
    
   0.672
hoxY
Hydrogenase small subunit.
    
   0.672
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.