STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cyl0018Conserved hypothetical protein. (158 aa)    
Predicted Functional Partners:
cyl0017
Contains a PilT protein, N-terminal domain.
 
   
 0.846
cyl0016
Hypothetical protein.
     
 0.821
cyl0020
Unknown.
     
 0.785
vapB
Putative virulence associated protein B.
     
 0.771
vapC2
Putative virulence associated protein C; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
     
 0.771
nifW
Nitrogen fixation protein; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
   
 0.761
cyl0013
Putative molybdate ABC transporter, permease protein.
     
 0.745
cce_0566
DUF269-containing protein.
 
     0.677
cce_2345
Unknown; Contains a Cupin, RmlC-type domain.
 
     0.664
cce_0567
DUF683-containing protein.
 
     0.658
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.