STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cyl0021Hypothetical protein; Contains a phosphoribosyltransferase domain. (219 aa)    
Predicted Functional Partners:
smf
DNA processing protein.
 
 
 0.925
comE
Competence protein.
 
  
 0.919
cce_4061
Mg chelatase-like protein.
 
  
 0.828
cce_2495
DNA repair protein radC; Belongs to the UPF0758 family.
 
    0.765
tyrA
Prephenate dehydrogenase.
   
  
 0.759
cce_1521
Unknown; Contains PAS, GGDEF, EAL, Response regulator receiver, CheY-like, and PAS fold-3 domains.
  
  
 0.746
cce_2493
Contains a DNA repair protein RadC fragment.
 
    0.733
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.725
cce_4637
N-acetyl-glucosamine-6-phosphate deacetylase.
  
    0.721
cce_0656
Two-component hybrid sensor and regulator.
  
  
 0.693
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.