STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
petJCytochrome c family protein. (111 aa)    
Predicted Functional Partners:
psbV
Photosystem II extrinsic protein, cytochrome c550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.
   
 0.963
cce_1107
Cytochrome c family protein.
  
  
 
0.914
petE
Plastocyanin.
     
 0.878
psb28
Photosystem II 13 kD protein; Belongs to the Psb28 family.
  
   
 0.788
psbU
Photosystem II 12 kD extrinsic protein; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.
  
   
 0.767
cce_0650
UPF YGGT-containing protein.
  
     0.751
psbO
Photosystem II manganese-stabilizing polypeptide, 33 kD extrinsic protein; MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII.
  
   
 0.750
cce_2129
Unknown.
  
     0.725
cce_3383
Unknown.
  
     0.720
cce_3652
Conserved hypothetical protein.
  
     0.706
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.