STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_0658Unknown; Contains an Armadillo-like helical domain. (250 aa)    
Predicted Functional Partners:
cce_4092
Hypothetical protein; Contains HesB/YadR/YfhF domains; Belongs to the HesB/IscA family.
    
 
 0.793
cpcE
Phycocyanin alpha phycocyanobilin lyase.
  
     0.723
cce_3774
Unknown; Contains an Armadillo-like helical domain.
  
     0.716
cce_0453
Putative transcriptional regulator AbrB.
  
     0.715
ndhM
NADH dehydrogenase subunit M; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.712
nblB
Phycocyanin alpha phycocyanobilin lyase related protein.
  
     0.704
cce_0335
Putative Prokaryotic chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
     0.703
cce_2199
Conserved hypothetical protein; Belongs to the UPF0367 family.
  
     0.701
cce_3269
Unknown.
  
     0.685
cce_4619
Unknown.
  
     0.676
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.