STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_0675Sterol desaturase family protein. (286 aa)    
Predicted Functional Partners:
shc
Squalene-hopene-cyclase.
   
 
 0.810
cce_1843
Putative terpenoid synthase.
  
 
 0.624
crtB
Phytoene synthase.
  
 
 0.624
cce_0674
Hypothetical protein.
       0.584
cce_0772
Unknown; Contains a FAD dependent oxidoreductase domain.
   
 
 0.473
cce_2733
Putative Monooxygenase, FAD-binding.
   
 
 0.473
cce_3426
Unknown.
   
 
 0.473
cce_1521
Unknown; Contains PAS, GGDEF, EAL, Response regulator receiver, CheY-like, and PAS fold-3 domains.
   
  
 0.446
cce_5137
Putative nuclease.
   
    0.444
cce_3078
Polyketide synthase.
  
 
 0.421
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.