Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cce_0698Acetyltransferase, trimeric LpxA-like protein. (211 aa)    
Predicted Functional Partners:
cce_0411
Putative acetyl transferase.
  
     0.661
cce_0696
Hypothetical protein.
 
     0.613
cce_0697
Putative acetyltransferase, Eis type.
     
 0.563
cce_3078
Polyketide synthase.
     
 0.488
cce_1468
Putative lipopolysaccharide biosynthesis.
  
  
 0.482
cce_1994
Unknown.
  
  
 0.482
cce_3079
Probable polyketide synthase.
     
 0.476
cce_1233
ABC transporter ATP binding subunit.
    
 0.434
cce_0699
Hypothetical protein.
       0.426
cce_0695
Cytochrome P450.
  
    0.412
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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