Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0699Hypothetical protein. (2328 aa)    
Predicted Functional Partners:
cce_3033
Hypothetical protein; Contains a serralysin-like metalloprotease, C-terminal domain.
  
   0.800
cce_4554
Unknown; Contains a nitroreductase domain.
  
     0.710
cce_0015
Unknown; Contains a Lambda repressor-like, DNA-binding domain.
  
   
 0.649
cce_2006
Hypothetical protein; Contains a DoxX domain.
  
     0.637
cce_3492
Hypothetical protein; Contains a serralysin-like metalloprotease, C-terminal domain.
  
   0.620
cce_0027
Hypothetical protein; Contains a RelA/SpoT domain.
  
     0.610
cce_3069
Unknown.
  
     0.578
cce_3041
Conserved hypothetical protein.
  
     0.575
cce_4796
Putative peptidase; Belongs to the peptidase S8 family.
  
 
 0.564
cce_1792
Unknown; Contains an acid phosphatase/vanadium-dependent haloperoxidase domain.
 
  
 0.545
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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