Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
cce_0734Contains a quinoprotein amine dehydrogenase, beta chain-like domain. (567 aa)    
Predicted Functional Partners:
cce_0110
Unknown; Contains a transposase, IS605 OrfB domain.
  
     0.705
cce_4098
Putative amidohydrolase 2.
  
     0.639
cce_0608
Unknown.
  
    0.589
cce_3052
Hypothetical protein; Contains a TonB, C-terminal domain.
  
    0.589
cce_1872
Unknown; Contains a Cytochrome c region domain.
  
 
 0.578
cce_4796
Putative peptidase; Belongs to the peptidase S8 family.
 
  
 0.542
nifJ
Pyruvate oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
   
   0.523
cce_1451
Unknown.
  
     0.500
lpdA
Dihydrolipoamide dehydrogenase.
  
  
 0.491
cce_5100
Putative ATPase.
  
     0.479
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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