Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cce_0771Hypothetical protein; Contains a ferredoxin domain. (123 aa)    
Predicted Functional Partners:
nifU
Iron-sulfur cluster assembly protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
 0.900
hoxF
NADH dehydrogenase I chain F.
  
 
 0.880
cce_0772
Unknown; Contains a FAD dependent oxidoreductase domain.
     
 0.773
cce_3078
Polyketide synthase.
   
 0.643
psaE
Photosystem I reaction center subunit IV; Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase; Belongs to the PsaE family.
  
 
 
 0.634
cce_3079
Probable polyketide synthase.
   
 0.621
cce_3080
Polyketide synthase type I.
   
 0.590
cce_1537
Unknown; Belongs to the orange carotenoid-binding protein family.
  
     0.556
cce_0773
Unknown.
       0.533
psaD
Photosystem I reaction center subunit II.
    
 
 0.515
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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