Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0778Unknown; Catalyzes the decarbonylation of fatty aldehydes to alkanes. (231 aa)    
Predicted Functional Partners:
cce_1430
Unknown; Contains a short-chain dehydrogenase/reductase SDR domain.
 
 
 
 0.995
cce_2740
Conserved hypothetical protein.
  
     0.699
cce_3627
DUF1257-containing protein.
  
     0.660
cce_0453
Putative transcriptional regulator AbrB.
  
     0.621
cce_2571
Unknown.
  
     0.617
cce_3447
Hypothetical protein; Contains DUF820.
  
     0.617
cce_2029
Unknown; Contains an OstA-like protein domain.
  
     0.609
cce_3580
Conserved hypothetical protein.
  
     0.608
feoA2
Ferrous iron transport protein A.
      
 0.588
cce_3703
Unknown; Contains DUF820.
  
     0.583
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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