STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0793Unknown; Contains a cupredoxin domain. (506 aa)    
Predicted Functional Partners:
cce_0792
Hypothetical protein; Contains DUF411 and Thioredoxin fold domains.
 
   
 0.833
cce_1180
Unknown; Contains a cupredoxin domain.
  
  
 0.704
petE
Plastocyanin.
   
 
 0.691
tatC
Sec-independent protein translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.
    
 
 0.594
cce_0794
Hypothetical protein.
       0.464
cce_3910
Conserved hypothetical protein.
  
     0.455
cce_1844
Unknown; Contains an EF-Hand type domain.
 
 
 0.447
cce_1185
Two-component hybrid sensor and regulator.
  
 
 0.430
cce_1777
Probable two-component hybrid sensor and regulator.
  
 
 0.426
cce_5182
Unknown; Contains a Cyclic nucleotide-binding domain.
 
   
 0.416
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.