STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_0880Hypothetical protein; Contains a transposase, IS605 OrfB domain. (413 aa)    
Predicted Functional Partners:
cce_1950
Transposase.
  
     0.743
cce_2083
Transposase.
  
     0.737
cce_2368
Transposase.
  
     0.710
cce_1782
Putative transposase.
  
     0.700
cce_1784
Transposase.
  
    0.645
cce_2369
Transposase IS200-like protein.
  
    0.644
cce_5062
Unknown; Contains a HNH endonuclease domain.
  
     0.640
cce_3467
Transposase.
  
    0.518
cce_0879
Hypothetical protein.
       0.461
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.