STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0891Unknown; Contains an outer membrane efflux protein domain. (559 aa)    
Predicted Functional Partners:
cce_2192
Putative HlyD-family secretion protein.
 
 
 0.979
cce_4695
Unknown; Contains a secretion protein HlyD domain; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.923
cce_0413
Unknown; Contains a secretion protein HlyD domain; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.892
cce_1708
Unknown; Contains a secretion protein HlyD domain; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.883
cce_0870
Contains a secretion protein HlyD domain; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.881
cce_2990
Unknown; Contains a secretion protein HlyD domain; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.878
cce_2007
Contains a secretion protein HlyD domain; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.852
cce_2945
Contains a secretion protein HlyD domain.
  
 0.822
cce_2379
Bacterial surface antigen D15-like protein.
 
   
 0.775
cce_2544
RND multidrug efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.748
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.