STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_0947Unknown; Contains DUF820. (192 aa)    
Predicted Functional Partners:
cce_0948
ATP-binding protein of amino acid ABC transporter.
       0.732
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
       0.526
cce_1082
Hypothetical protein; Contains DUF820.
  
     0.524
cce_4530
Hypothetical protein; Contains DUF820.
  
     0.489
cce_1405
Hypothetical protein; Contains DUF820.
  
     0.472
cce_2532
Unknown.
  
     0.461
cce_1425
Hypothetical protein; Contains DUF820.
  
     0.439
cce_1404
Unknown; Contains DUF820.
  
     0.432
cce_4661
Hypothetical protein; Contains DUF820.
  
     0.430
cce_1742
Hypothetical protein; Contains DUF820.
  
     0.423
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.