Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0985Hypothetical protein; Contains DUF820. (214 aa)    
Predicted Functional Partners:
cce_2030
Hypothetical protein.
  
     0.690
cce_0984
Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.689
cce_4233
Hypothetical protein; Contains DUF820.
  
     0.674
cce_2031
Hypothetical protein.
  
     0.635
cce_3302
Unknown; Contains DUF820.
  
     0.617
cce_1726
Unknown; Contains DUF820.
  
     0.587
cce_1405
Hypothetical protein; Contains DUF820.
  
     0.573
cce_4345
Putative membrane protein.
  
     0.562
cce_2576
Hypothetical protein; Contains DUF820.
  
     0.559
cce_2320
Hypothetical protein; Contains DUF820.
  
     0.547
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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