STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_0986Unknown; Contains a methyltransferase type 11 domain. (401 aa)    
Predicted Functional Partners:
apcD
allophycocyanin-B.
  
   
 0.792
cpcB
Phycocyanin beta subunit.
  
   
 0.791
apcF
Phycobilisome core component.
  
   
 0.784
apcB
Allophycocyanin beta subunit.
  
   
 0.779
apcE
Phycobilisome core-membrane linker polypeptide; Belongs to the phycobilisome linker protein family.
 
     0.774
apcC
Phycobilisome LC linker polypeptide; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
  
     0.774
cpcA
Phycocyanin alpha subunit.
  
   
 0.773
cpcT
DUF1001-containing protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
     0.772
cpcC2
Phycocyanin associated linker protein; Belongs to the phycobilisome linker protein family.
  
     0.772
cpcC1
Phycocyanin associated linker protein; Belongs to the phycobilisome linker protein family.
  
     0.772
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.