Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_1000Unknown; Contains a SMAD/FHA domain. (132 aa)    
Predicted Functional Partners:
cce_1894
Conserved hypothetical protein.
  
   
 0.756
cce_4184
Hypothetical protein; Contains DUF1232.
  
     0.743
cce_3950
Hypothetical protein; Contains DUF1232.
  
     0.710
cce_4425
Conserved hypothetical protein.
  
    0.685
cce_1589
Unknown; Contains a transglutaminase-like domain.
  
     0.684
cce_4143
Unknown.
  
     0.673
cce_5042
Hypothetical protein; Contains a CHASE2 extracellular sensory domain.
 
     0.660
cce_1545
rfrA family pentapeptide repeat.
  
    0.656
cce_3428
Hypothetical protein.
  
    0.648
cce_2116
Serine/threonine protein kinase.
 
 
   0.628
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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