STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufDPutative iron-sulfur assembly protein. (449 aa)    
Predicted Functional Partners:
sufC
Iron-sulfur assembly ATPase.
 
 0.996
sufS
Cysteine desulphurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.992
nifU
Iron-sulfur cluster assembly protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.874
cce_2607
Putative L-cysteine/cystine lyase.
 
 0.836
cce_2328
Putative Fe-S metabolism associated SufE.
 
 
 0.631
sufB
Iron-sulfur assembly protein.
 
   
0.498
cce_0021
Unknown; Contains HesB/YadR/YfhF domains; Belongs to the HesB/IscA family.
  
 
 0.450
hesB
Fe-S cluster biosynthesis, putative nitrogen fixation related protein; Belongs to the HesB/IscA family.
  
 
 0.450
cce_4092
Hypothetical protein; Contains HesB/YadR/YfhF domains; Belongs to the HesB/IscA family.
  
 
 0.450
cce_1006
Unknown; Contains a FAD linked oxidase, N-terminal domain.
       0.430
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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