STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_1023Contains an Acyl carrier protein-like domain. (85 aa)    
Predicted Functional Partners:
hoxF
NADH dehydrogenase I chain F.
   
 0.950
cce_1025
AMP-dependent synthetase and ligase/probable acyl-CoA synthase.
 
   0.911
cce_1466
Probable AMP-dependent synthetase and ligase.
 
 
 0.853
cce_1022
Alginate O-acetylation protein / membrane bound O-acyl transferase, MBOAT; Belongs to the membrane-bound acyltransferase family.
  
 
 0.826
cce_3078
Polyketide synthase.
 
 
 0.811
cce_3077
AMP-dependent synthetase and ligase, probable acyl-CoA synthase.
 
 0.803
cce_3079
Probable polyketide synthase.
 
 
 0.795
cce_1021
Hypothetical protein.
       0.773
cce_1028
AMP-dependent synthetase and ligase/probable acyl-CoA synthase.
 
   0.772
cce_1418
Probable AMP-dependent synthetase and ligase.
 
   0.771
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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