Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_1036Unknown. (529 aa)    
Predicted Functional Partners:
cce_3156
Putative branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.769
cce_1067
Unknown.
  
     0.759
cce_2946
Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.711
cce_0537
Unknown.
  
     0.702
cce_3206
Hypothetical protein; Contains a CpcD phycobilisome linker-like domain.
  
     0.696
cce_4355
Unknown.
  
     0.695
cce_0536
Unknown.
  
     0.691
cce_1037
Unknown.
       0.689
cce_1720
Hypothetical protein; Contains a Peptidase aspartic, catalytic domain.
  
     0.681
cce_0308
Unknown.
  
     0.680
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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