Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hupL[NiFe] uptake hydrogenase large subunit. (539 aa)    
Predicted Functional Partners:
hupS
[NiFe] uptake hydrogenase small subunit.
 0.999
hypA
Hydrogenase expression/synthesis; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 
 0.898
cce_1743
Probable peptidase M52, hydrogen uptake protein.
 
 
 0.891
hoxY
Hydrogenase small subunit.
  
 
 0.878
hypD
Hydrogenase isoenzymes formation protein.
 
 
 0.844
cce_3228
Heterodisulfide reductase, subunit B.
  
 
 0.813
cce_1854
Unknown.
 
     0.796
hypB
Hydrogenase accessory protein.
 
  
 0.796
hypE
Hydrogenase expression/formation protein.
 
   
 0.788
nifD
Nitrogenase molybdenum-iron protein alpha chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation.
      
 0.786
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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