STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hupL[NiFe] uptake hydrogenase large subunit. (539 aa)    
Predicted Functional Partners:
hupS
[NiFe] uptake hydrogenase small subunit.
 0.999
nifJ
Pyruvate oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
  
  
 0.968
hoxY
Hydrogenase small subunit.
  
 
 0.965
hypA
Hydrogenase expression/synthesis; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 
 0.947
cce_3352
Unknown; Contains a coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal domain.
  
 
 0.889
cce_4662
Unknown; Contains a coenzyme F420 hydrogenase/dehydrogenase beta subunit domain.
  
 
 0.889
cce_1743
Probable peptidase M52, hydrogen uptake protein.
 
 
 0.888
cce_3228
Heterodisulfide reductase, subunit B.
  
 
 0.870
hypD
Hydrogenase isoenzymes formation protein.
 
 
 0.857
hypB
Hydrogenase accessory protein.
 
  
 0.819
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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