STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_1080Unknown; Contains a metallophosphoesterase domain. (363 aa)    
Predicted Functional Partners:
cce_1079
Hypothetical protein; Contains UPF0150.
       0.741
cce_3864
Putative S-layer OprB family carbohydrate-selective porin; Belongs to the OprB family.
  
     0.636
cce_5127
Unknown.
  
     0.585
cce_0109
Hypothetical protein; Contains a polysaccharide deacetylase domain.
  
     0.564
cce_0191
Hypothetical protein.
  
     0.530
cce_4308
Hypothetical protein; Contains a cobalamin (vitamin B12) biosynthesis CbiX domain.
  
     0.523
cce_5175
Hypothetical protein.
  
     0.523
cce_1368
Hypothetical protein.
  
    0.505
ribA
GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.502
cce_0190
Hypothetical protein.
  
     0.497
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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