Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cce_1085Hypothetical protein; Contains DUF102; Belongs to the UPF0284 family. (369 aa)    
Predicted Functional Partners:
cbiGH
Probable bifunctional Cobalamin (vitamin B12) biosynthesis/precorrin-3B C17-methyltransferase.
 
  
 0.909
cobU
Bifunctional cobalbumin biosynthesis enzyme.
  
  
 0.755
cce_2740
Conserved hypothetical protein.
  
     0.691
cce_2571
Unknown.
  
     0.670
cbiD
Cobalamin biosynthesis protein D; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
 
  
 0.659
cbiE
Precorrin-6y c5,15-methyltransferase.
  
  
 0.652
cce_2029
Unknown; Contains an OstA-like protein domain.
  
     0.645
cce_0456
Thioredoxin-like protein.
  
     0.642
cce_3226
Conserved hypothetical protein.
  
     0.640
hemD
Bifunctional uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase; Belongs to the precorrin methyltransferase family.
  
  
 0.628
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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