Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_1098Putative N-6 DNA methylase. (604 aa)    
Predicted Functional Partners:
cce_1102
Putative helicase.
     0.981
cce_1097
Hypothetical protein.
      0.954
cce_3259
Conserved hypothetical protein.
  
     0.639
cce_1099
Hypothetical protein.
       0.613
cce_1767
Hypothetical protein.
  
     0.511
cce_3367
Hypothetical protein; Contains DUF433.
  
     0.495
cce_5000
Putative plasmid maintenance toxin/cell growth inhibitor.
  
     0.486
cce_2469
Unknown; Contains DUF820.
  
     0.449
cce_0985
Hypothetical protein; Contains DUF820.
  
     0.448
cce_4232
Transposase.
  
     0.441
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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