STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_1113Periplasmic polyamine-binding protein of ABC transporter. (390 aa)    
Predicted Functional Partners:
cce_3801
Putative iron(III)-transport ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.920
cce_1114
Unknown.
       0.570
cce_0318
Unknown.
  
     0.532
cce_0494
Unknown.
  
   
 0.525
cce_0862
Unknown.
  
     0.523
cce_4116
Hypothetical protein; Contains DUF477.
 
     0.493
cce_2401
Unknown; Contains glutaredoxin 2 and thioredoxin fold domains.
  
     0.467
cce_1922
Unknown.
  
     0.454
cce_0056
Hypothetical protein; Contains an S-layer homology (SLH) domain.
  
     0.452
ftrC
Ferredoxin thioredoxin reductase catalytic chain; Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin.
  
     0.440
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.