Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
fadDProbable long-chain-fatty-acid CoA ligase. (638 aa)    
Predicted Functional Partners:
cce_1134
Unknown.
      0.883
cce_4134
Hypothetical protein; Contains a Lipase, class 2 domain.
   
 
 0.873
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.724
cce_3248
acyl-CoA dehydrogenase family protein.
  
 0.693
cce_4049
acyl-CoA dehydrogenase.
  
 0.693
menE
O-succinylbenzoic acid CoA ligase.
 
 
 0.667
cce_3077
AMP-dependent synthetase and ligase, probable acyl-CoA synthase.
  
 0.658
glpD
Probable glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.654
fabD
Malonyl coenzyme A-acyl carrier protein transacylase.
 
  
 
 0.636
prk
Phosphoribulokinase.
     
 0.616
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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