Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cce_1153Esterase. (296 aa)    
Predicted Functional Partners:
cce_3077
AMP-dependent synthetase and ligase, probable acyl-CoA synthase.
  
 0.800
cce_3078
Polyketide synthase.
  
 0.761
todF
2-hydroxy-6-oxohepta-2,4-dienoate hydrolase.
  
     0.752
cce_3079
Probable polyketide synthase.
  
 0.741
cce_2817
Hypothetical protein; Contains an alpha/beta hydrolase fold-1.
  
     0.738
cce_0529
Putative alpha/beta hydrolase.
  
     0.526
cce_2662
Conserved hypothetical protein.
  
     0.497
cce_1154
Putative AB-hydrolase YheT.
   
   0.492
cce_3080
Polyketide synthase type I.
  
 0.473
cce_1632
PEP/pyruvate-binding protein.
  
     0.469
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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